PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.1A39F
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 546aa    MW: 59134.6 Da    PI: 8.8246
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.1A39FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05102124123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C++C+k F r  nL+ H r H
  Aradu.1A39F 102 FICEICNKGFQRDQNLQLHRRGH 124
                  89*******************88 PP

2zf-C2H211.10.0013178200123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Aradu.1A39F 178 WKCDKCSKKYAVQSDWKAHSKIC 200
                  58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.05E-7101124No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5101124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.845102124IPR007087Zinc finger, C2H2
PfamPF121716.6E-5102124IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.022102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-4166199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.05E-7173198No hitNo description
SMARTSM00355150178198IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MSNITSCDSG SFSTENTVPL LEDAVVKQQS SEILGGRFHH SPHSHTSTTT TNNNNNNTNA  60
SNTNSQPPPP PPKKKRNLPG NPDPSAEVIA LSPTTLMATN RFICEICNKG FQRDQNLQLH  120
RRGHNLPWKL KQRTSAEVRK RVYVYPESSC VHHNPARALG DLTGIKKHFC RKHGEKKWKC  180
DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNNKKNEG  240
SLFPNIPSNL QSQPQIPNLL LPSLPINTTP TTLSSSSSLP LHHDLIIPNP SFNNIPFPRN  300
PNTTTTTTTT TTSHPSLQLT STIFDDNALH LTASSSSLSS PHMSATALLQ KAAQMGATVS  360
SSNNNNNMVV ENSNKGGGYV TATTSMAPPS FSGVAPMQQN VNNNNNSLFM NQFMQQDMAT  420
TPHHYGNLMC GMNGVDMFNA ILDQSKALSK IIDHSNHHRE SAVAKRECTK GGSIGGNSDV  480
MTLDLLGIGG GGGGGHNGSG GFYGGGNNNN NQQQGDNNGA ASVRDEVWNW STKNAGFESF  540
SATSSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939804.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-115IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLV7BGH70.0V7BGH7_PHAVU; Uncharacterized protein
STRINGGLYMA20G37900.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.12e-96C2H2 family protein